PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469446.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 317aa    MW: 36684.4 Da    PI: 10.682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.3e-13411141189
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     lks   +lp kf++++g+k+++   l+++ e+ rsW++kl    + +++++++ W eF +an++k+gD ++F+++ + e
  XP_016469446.1  41 LKS--KRLPGKFTKANGLKNKK-CGLIIRGERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFEVVANGE 114
                     444..489********777544.47999************..66667889***********************887533 PP
2B356.45.6e-18179265596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    ++  +++++GW++F+ an LkegD v+F  +  +++++ +k+
  XP_016469446.1 179 TMKPYYLSKHFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGTVTYIGGGWRDFCIANCLKEGDRVMFGIVA-NGEKPILKF 265
                     57899999999***********999766.5999999.779******..888888*************************876.555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1127120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.19329123IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-1430120IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-533126IPR003340B3 DNA binding domain
PfamPF023624.2E-1141115IPR003340B3 DNA binding domain
CDDcd100172.19E-945108No hitNo description
SuperFamilySSF1019365.3E-20171265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19172265IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-15174267No hitNo description
PROSITE profilePS5086311.392175268IPR003340B3 DNA binding domain
SMARTSM010197.0E-15176269IPR003340B3 DNA binding domain
PfamPF023622.5E-15179266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKERWSLRLP SLIQVTVTES MRSICKTKKT HILLKILPRN LKSKRLPGKF TKANGLKNKK  60
CGLIIRGERQ RSWNLKLYTS YSQVYIGGKW GEFRDANDIK VGDRIMFEVV ANGERPIWKF  120
HHLRKNASLQ PEGMKTNSDT ERVSTPEKPK SNTISSREAV PNVEAAKDMH LGHPHFICTM  180
KPYYLSKHFL RVPSPFARQH GLRDRKCTIM IRDEQRSWTF TLYSCGTVTY IGGGWRDFCI  240
ANCLKEGDRV MFGIVANGEK PILKFHDLRG NASLQPERFH SRSGFQEQTL VAELHFFSFH  300
FSDSIFSSCT FKRNNRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469446.10.0PREDICTED: putative B3 domain-containing protein REM15 isoform X6
TrEMBLM1AKH21e-96M1AKH2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246733e-96(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-19B3 family protein